Matt, I do feel your frustration..
Let's assume that the new electrical components eliminate "temperature" related tuning from the ignition, and you have consistent spark at all temps. The next logical issue is fuel supply and metering. Fuel vapor lock? Sending unit/pickup clogged with contamination?
Hook a can of gas to the fuel pump( safely), eliminate that possibility. Back to the emissions related "leaks " that allow the system to bleed air into the intake. If necessary, set the car up temporarily minus all emission and evaluate all operating temp situations. You will find the gremlin.
The Last is a complete multi temp leakdown test of the head gasket integrity (you could do this first and save a bunch of time and grief if it's the problem)
Nothing will save a poor seal at the head, you can tune yourself into an asylum, if it's the problem.
Have faith, the answer is there..
Pintosopher , been there, done that, and paid the price